- safeDirection(Point2D, Collection<Point2D>) - Static method in enum net.talvi.puffinplot.plots.Direction
-
Given a "central" point and a collection of "peripheral" points,
safeDirection attempts to find a quadrant containing no peripheral
points.
- sameHemisphere(Vec3) - Method in class net.talvi.puffinplot.data.Vec3
-
Returns true if and only if the supplied vector is in the same
(upper/lower) hemisphere as this one.
- Sample - Class in net.talvi.puffinplot.data
-
This class represents a sample on which measurements have been made.
- Sample(String, Suite) - Constructor for class net.talvi.puffinplot.data.Sample
-
Creates a new sample.
- sampleAzimuth - Variable in class net.talvi.puffinplot.data.file.VectorAndOrientations
-
A sample azimuth value in degrees.
- sampleChanged() - Method in class net.talvi.puffinplot.window.MainMenuBar
-
Alerts the menu bar that the current sample has changed.
- sampleChanged() - Method in class net.talvi.puffinplot.window.MainWindow
-
Informs this window that the current sample has changed.
- SampleChooser - Class in net.talvi.puffinplot.window
-
A component allowing a user to choose the current sample and the selected
samples.
- sampleClicked(Sample) - Method in interface net.talvi.puffinplot.plots.SampleClickListener
-
Invoked when a sample is clicked in a plot.
- SampleClickListener - Interface in net.talvi.puffinplot.plots
-
An interface for classes which want to be notified of clicks on samples.
- sampleDip - Variable in class net.talvi.puffinplot.data.file.VectorAndOrientations
-
A sample dip value in degrees.
- SampleEqualAreaPlot - Class in net.talvi.puffinplot.plots
-
An equal-area plot showing sample data.
- SampleEqualAreaPlot(PlotParams) - Constructor for class net.talvi.puffinplot.plots.SampleEqualAreaPlot
-
Creates a sample equal-area plot with the supplied parameters.
- SampleGroup - Interface in net.talvi.puffinplot.data
-
An interface for any grouping of samples (at time of writing:
a Site, Suite, or CoreSection).
- SampleParamsLegend - Class in net.talvi.puffinplot.plots
-
A textual display of a set of parameters for a single sample.
- SampleParamsLegend(PlotParams) - Constructor for class net.talvi.puffinplot.plots.SampleParamsLegend
-
Creates a new sample parameter legend with the supplied parameters.
- SampleParamsTable - Class in net.talvi.puffinplot.plots
-
A table showing sample directions for the current site.
- SampleParamsTable(PlotParams) - Constructor for class net.talvi.puffinplot.plots.SampleParamsTable
-
Creates a sample parameter table with the supplied parameters.
- SampleRpiEstimate - Interface in net.talvi.puffinplot.data
-
An estimate of relative palaeointensity for a single sample.
- save(Preferences) - Method in class net.talvi.puffinplot.data.SensorLengths
-
Writes a string representation of the sensor lengths to a specified
Preferences object.
- save() - Method in class net.talvi.puffinplot.data.Suite
-
If a default PuffinPlot file is set for this suite, saves the suite data
to that file.
- save - Variable in class net.talvi.puffinplot.PuffinActions
-
If a PuffinPlot file is associated with the current suite,
the suite is saved to that file.
- save() - Method in class net.talvi.puffinplot.PuffinApp
-
Saves the current suite under its current filename.
- save(Suite) - Method in class net.talvi.puffinplot.PuffinApp
-
Saves the specified suite under its current filename.
- save() - Method in class net.talvi.puffinplot.PuffinPrefs
-
Saves the preferences to the preferences backing store.
- save(Consumer<String>, BiConsumer<String, String>) - Method in class net.talvi.puffinplot.RecentFileList
-
Stores the recent file list using the supplied remover and putter
functions.
- saveAs(File) - Method in class net.talvi.puffinplot.data.Suite
-
Saves the data in this suite to a specified file.
- saveAs - Variable in class net.talvi.puffinplot.PuffinActions
-
Opens a ‘save’ dialog box; the current suite is saved to the
selected file in PuffinPlot format.
- saveCalcsSample(File) - Method in class net.talvi.puffinplot.data.Suite
-
Exports sample calculations to a specified file in CSV format.
- saveCalcsSite(File) - Method in class net.talvi.puffinplot.data.Suite
-
Exports site calculations to a specified file in CSV format.
- saveCalcsSuite(File) - Method in class net.talvi.puffinplot.data.Suite
-
Saves the Fisher mean direction for the whole suite to a file in CSV
format
- savedStateChanged(boolean) - Method in interface net.talvi.puffinplot.data.Suite.SavedListener
-
This method is called when the Suite's save state changes.
- saveToSvgBatik(String) - Method in class net.talvi.puffinplot.window.GraphDisplay
-
Writes the contents of this display to an SVG file using the Batik
library.
- saveToSvgFreehep(String) - Method in class net.talvi.puffinplot.window.GraphDisplay
-
Writes the contents of this display to an SVG file using the FreeHEP
library.
- scaleLine(Line2D, double) - Static method in class net.talvi.puffinplot.Util
-
Scales a line around its midpoint.
- selectAll() - Method in class net.talvi.puffinplot.data.Sample
-
Selects all the treatment steps within this sample.
- selectAll - Variable in class net.talvi.puffinplot.PuffinActions
-
Within each selected sample, selects all the points.
- selectByRectangle(Rectangle2D, boolean) - Method in class net.talvi.puffinplot.plots.Plot
-
Sets selection state for data points in a rectangle.
- selectByTreatmentLevelRange(double, double) - Method in class net.talvi.puffinplot.data.Sample
-
Selects all treatment steps within a certain treatment level range.
- selectNone() - Method in class net.talvi.puffinplot.data.Sample
-
De-selects all the treatment steps within this sample.
- selectVisible() - Method in class net.talvi.puffinplot.data.Sample
-
Selects all the visible (non-hidden) treatment steps within this sample.
- SensorLengths - Class in net.talvi.puffinplot.data
-
Represents the effective SQUID sensor lengths of a magnetometer, as
determined by the response curves of the SQUID sensors.
- SeparateSuiteEqualAreaPlot - Class in net.talvi.puffinplot.plots
-
An equal-area plot showing suite-level Fisher statistics.
- SeparateSuiteEqualAreaPlot(PlotParams, Rectangle2D) - Constructor for class net.talvi.puffinplot.plots.SeparateSuiteEqualAreaPlot
-
Creates a suite equal-area plot with the supplied parameters.
- set(int, T) - Method in class net.talvi.puffinplot.data.CustomFields
-
Sets a specified custom field to a specified value.
- set2gProtocol(TwoGeeLoader.Protocol) - Method in class net.talvi.puffinplot.PuffinPrefs
-
Sets the measurement protocol to use when opening 2G data files.
- setAfX(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
For AF or ARM treatment, sets the x-axis AF field strength in tesla.
- setAfY(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
For AF or ARM treatment, sets the y-axis AF field strength in tesla.
- setAfZ(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
For AF or ARM treatment, sets the z-axis AF field strength in tesla.
- setAmsDirections(double, double, double, double, double, double) - Method in class net.talvi.puffinplot.data.Sample
-
Sets the AMS data for the sample using the supplied principal directions.
- setAmsFromTensor(double, double, double, double, double, double) - Method in class net.talvi.puffinplot.data.Sample
-
Sets the AMS data for this sample using the supplied tensor.
- setArea(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
For continuous measurements, sets the cross-sectional area of the core.
- setArmAxis(ArmAxis) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
For ARM treatment, sets the axis of the ARM field.
- setArmField(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
For ARM treatment, sets the ARM bias field strength.
- setAxisScaleLocked(boolean) - Method in class net.talvi.puffinplot.PuffinPrefs
-
Sets whether the axis scale is locked across all samples in the
current suite.
- setCorrection(Correction) - Method in class net.talvi.puffinplot.PuffinApp
-
Sets the correction to apply to the displayed data.
- setCorrection(Correction) - Method in class net.talvi.puffinplot.window.ControlPanel
-
Sets the correction to apply to magnetic moment data.
- setCorrections(double, double, double, double, double) - Method in class net.talvi.puffinplot.data.Sample
-
Sets the orientation corrections for this sample's magnetic moment data.
- setCurrentSampleIndex(int) - Method in class net.talvi.puffinplot.data.Suite
-
Sets the index defining the current sample.
- setCurrentSuite(int) - Method in class net.talvi.puffinplot.PuffinApp
-
Sets the currently displayed Suite.
- setDepth(String) - Method in class net.talvi.puffinplot.data.Sample
-
Set the depth of this sample.
- setDepth(String) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
For continuous measurements, sets the depth of this measurement within
the core.
- setDimensions(Rectangle2D) - Method in class net.talvi.puffinplot.plots.Plot
-
Sets the dimensions of this plot.
- setDimensions(Rectangle2D) - Method in class net.talvi.puffinplot.plots.SiteEqualAreaPlot
-
- setDimensionsToDefault() - Method in class net.talvi.puffinplot.plots.Plot
-
- setDiscreteId(String) - Method in class net.talvi.puffinplot.data.Sample
-
Sets the discrete ID of this sample by setting the discrete IDs of its
TreatmentStep objects, if the sample has any
TreatmentStep objects.
- setDiscreteId(String) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
For discrete samples, sets the sample identifier (name).
- setDragPlotMode(boolean) - Method in class net.talvi.puffinplot.window.GraphDisplay
-
Sets whether the plots are draggable by the user.
- setEmptySlot(boolean) - Method in class net.talvi.puffinplot.data.Sample
-
Sets whether this sample is an empty slot on the measurement tray.
- setFormAz(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the formation dip azimuth.
- setFormDip(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the formation dip angle.
- setFormStrike(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the formation strike for this treatment step.
- setGroupedBySite(boolean) - Method in class net.talvi.puffinplot.plots.SeparateSuiteEqualAreaPlot
-
Sets whether the Fisher means are to be grouped by site.
- setHidden(boolean) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets whether this treatment step should be hidden on plots.
- setImportedDirection(Vec3) - Method in class net.talvi.puffinplot.data.Sample
-
Sets an imported direction for this sample.
- setInPca(boolean) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets whether this measurement is to be used for a PCA fit.
- setIrmField(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
For IRM treatment, sets the IRM field strength in tesla.
- setLine(Line) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the measurement's data-file line.
- setLocation(Location) - Method in class net.talvi.puffinplot.data.Site
-
Sets the location of this site.
- setMagDev(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the local geomagnetic field declination for the sampling site.
- setMagDevAppliedToFormation(boolean) - Method in class net.talvi.puffinplot.data.Correction
-
- setMagSus(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the magnetic susceptibility of the sample at this stage of
treatment.
- setMeasurementType(MeasurementType) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the type of this measurement (discrete or continuous).
- setMoment(Vec3) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the sample's magnetic dipole moment per unit volume
in A/m.
- setMomentToMean(List<TreatmentStep>) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the magnetization vector of this datum to the mean of the
magnetization vectors of data.
- setNamedSiteForSamples(Collection<Sample>, String) - Method in class net.talvi.puffinplot.data.Suite
-
Explicitly sets a site for the specified samples.
- setNameOrDepth(String) - Method in class net.talvi.puffinplot.data.Sample
-
Set the identifier of a sample.
- setOnCircle(boolean) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets whether this measurement is to be used for a great-circle fit.
- setPcaAnchored(boolean) - Method in class net.talvi.puffinplot.data.Sample
-
Sets whether principal component analysis should be anchored for this
sample
- setPcaAnchored(boolean) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets whether PCA fits for this point should be anchored.
- setPcaAnchored(boolean) - Method in class net.talvi.puffinplot.PuffinPrefs
-
Sets whether PCA fits should be anchored to the origin.
- setRecentFiles(RecentFileList) - Method in class net.talvi.puffinplot.PuffinApp
-
Sets the list of recently used files (allowing it to be restored after
restarting the application).
- setRotation(Correction.Rotation) - Method in class net.talvi.puffinplot.data.Correction
-
Sets the rotation correction.
- setRunNumber(int) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the number of the machine run during which this measurement was
made.
- setSampAz(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the sample's dip azimuth.
- setSampDip(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the sample's dip angle.
- setSampHade(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the sample hade for this treatment step.
- setSample(Sample) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the sample on which this measurement was made.
- setSaved(boolean) - Method in class net.talvi.puffinplot.data.Suite
-
Sets this suite's "saved" flag, which records whether the suite
has been saved since its last modification.
- setSelected(boolean) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the selection state of this treatment step.
- setSelectionBitSet(BitSet) - Method in class net.talvi.puffinplot.data.Sample
-
Sets the selection state of the sample's treatment steps from a supplied
bit set.
- setSensorLengths(SensorLengths) - Method in class net.talvi.puffinplot.PuffinPrefs
-
Sets the effective sensor lengths for opening 2G data files.
- setSite(Site) - Method in class net.talvi.puffinplot.data.Sample
-
Sets the site for this sample.
- setSiteName - Variable in class net.talvi.puffinplot.PuffinActions
-
Opens a dialog box allowing the user to specify a site name
for the selected samples.
- setSiteNamesByDepth(Collection<Sample>, double) - Method in class net.talvi.puffinplot.data.Suite
-
Sets site names for a continuous suite according to the depth of the
samples.
- setSiteNamesBySubstring(Collection<Sample>, BitSet) - Method in class net.talvi.puffinplot.data.Suite
-
Sets site names for samples according to chosen characters from the
sample names.
- setSitesByDepth - Variable in class net.talvi.puffinplot.PuffinActions
-
Opens a dialog box allowing the user to specify a site thickness, which
is then used to divide a long core suite into sites based on sample
depths.
- setSitesForSamples(Collection<Sample>, Suite.SiteNamer) - Method in class net.talvi.puffinplot.data.Suite
-
Sets sites for supplied samples according to a supplied site namer.
- setSitesFromSampleNames - Variable in class net.talvi.puffinplot.PuffinActions
-
Opens a dialog box allowing the user to specify which characters of
the currently selected samples should be used to determine the site
name.
- setSize(int, T) - Method in class net.talvi.puffinplot.data.CustomFields
-
Sets the size of the list of custom fields.
- setSlotNumber(int) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the number of the measurement tray slot in which the sample was
measured.
- setSuite(Suite) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the data suite containing this measurement.
- setTemperature(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
For thermal treatment, sets the temperature in degrees Celsius.
- setTimestamp(String) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the timestamp of this measurement.
- setTreatmentSteps(List<TreatmentStep>) - Method in class net.talvi.puffinplot.data.file.SimpleLoadedData
-
Replace the current treatment step cache with a supplied list.
- setTreatmentType(TreatmentType) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the treatment applied before this measurement (AF, thermal, etc.).
- setTreatType - Variable in class net.talvi.puffinplot.PuffinActions
-
Shows a window allowing the user to set the treatment type for
the selected samples.
- setValue(TreatmentParameter, String) - Method in class net.talvi.puffinplot.data.Sample
-
Sets the value of a specified field for each treatment step in the
sample.
- setValue(TreatmentParameter, String, double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the value of a specified treatment parameter using a string.
- setVisible(boolean) - Method in class net.talvi.puffinplot.plots.Plot
-
Sets whether this plot should be drawn.
- setVolume(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
For discrete measurements, sets the volume of the sample.
- setX(double) - Method in class net.talvi.puffinplot.data.Vec3
-
Sets the x component of this vector.
- setXDrift(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the x drift correction value.
- setY(double) - Method in class net.talvi.puffinplot.data.Vec3
-
Sets the y component of this vector.
- setYDrift(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the y drift correction value.
- setZ(double) - Method in class net.talvi.puffinplot.data.Vec3
-
Sets the z component of this vector.
- setZDrift(double) - Method in class net.talvi.puffinplot.data.TreatmentStep
-
Sets the z drift correction value.
- show() - Method in class net.talvi.puffinplot.PuffinApp
-
Shows the main window of this PuffinApp.
- show() - Method in class net.talvi.puffinplot.window.AlignDeclinationsDialog
-
Show the dialog, and perform the alignment if appropriate.
- show() - Method in class net.talvi.puffinplot.window.RpiDialog
-
Show this RPI dialog.
- showCalculateRpiDialog() - Method in class net.talvi.puffinplot.PuffinApp
-
Calculates RPI using two loaded suites.
- showCiteDialog - Variable in class net.talvi.puffinplot.PuffinActions
-
Opens the Citation window.
- showCreateBundleDialog() - Method in class net.talvi.puffinplot.PuffinApp
-
Shows the dialog for creating and exporting a data and code bundle.
- showCustomFlagsWindow - Variable in class net.talvi.puffinplot.PuffinActions
-
Opens a window which allows the user to edit the list of user-defined
flags for the current suite.
- showCustomFlagsWindow() - Method in class net.talvi.puffinplot.PuffinApp
-
Shows the window for editing the titles of the custom flags.
- showCustomNotesWindow - Variable in class net.talvi.puffinplot.PuffinActions
-
Opens a window which allows the user to edit the list of user-defined
note headings for the current suite.
- showCustomNotesWindow() - Method in class net.talvi.puffinplot.PuffinApp
-
Shows the window for editing the titles of the custom notes.
- showDialog(String, Frame, SwingWorker<Void, Void>) - Static method in class net.talvi.puffinplot.window.ProgressDialog
-
Create and show a progress dialog for a supplied SwingWorker.
- showDiscreteToContinuousDialog() - Method in class net.talvi.puffinplot.PuffinApp
-
Shows the dialog for a discrete to continuous sample conversion.
- showEditSampleParametersDialog - Variable in class net.talvi.puffinplot.PuffinActions
-
Opens a window allowing the user to edit the sample and formation
orientations and the local magnetic declination.
- showImportAmsDialog() - Method in class net.talvi.puffinplot.PuffinApp
-
Shows an ‘open files’ dialog box; if the user selects any files, AMS data
will be imported from them.
- showImportPreferencesDialog() - Method in class net.talvi.puffinplot.PuffinApp
-
Shows an ‘open file’ dialog box; if the user selects a file, the current
preferences will be overwritten with preferences data from that file.
- showMacOpenFolderDialog() - Method in class net.talvi.puffinplot.PuffinApp
-
Show the "Open folder" dialog on Mac OS X.
- showOpenFilesDialog(boolean) - Method in class net.talvi.puffinplot.PuffinApp
-
Shows an ‘open files’ dialog box.
- showOverMainWindow() - Method in class net.talvi.puffinplot.window.RemoveByDepthRangeDialog
-
Show this dialog, centred over the PuffinPlot app's main window.
- showPageSetupDialog() - Method in class net.talvi.puffinplot.PuffinApp
-
Opens the page setup dialog box.
- showPreferences() - Method in class net.talvi.puffinplot.PuffinApp
-
Opens the preferences window.
- showPrintDialog(String) - Method in class net.talvi.puffinplot.PuffinApp
-
Shows a print dialog.
- showRescaleMagSusDialog() - Method in class net.talvi.puffinplot.PuffinApp
-
Scales all magnetic susceptibility values in the current suite by
a user-specified factor.
- showRunJavascriptScriptDialog() - Method in class net.talvi.puffinplot.PuffinApp
-
Opens a file selection dialog and runs the Javascript script (if any)
which the user selects from that dialog.
- showRunPythonScriptDialog() - Method in class net.talvi.puffinplot.PuffinApp
-
Opens a file selection dialog and runs the Python script (if any) which
the user selects from that dialog.
- SimpleLoadedData - Class in net.talvi.puffinplot.data.file
-
A simple implementation of the
LoadedData interface.
- SimpleLoadedData() - Constructor for class net.talvi.puffinplot.data.file.SimpleLoadedData
-
- SimpleOptionDefinition - Class in net.talvi.puffinplot.data.file
-
- SimpleOptionDefinition(String, String, Class, Object, boolean) - Constructor for class net.talvi.puffinplot.data.file.SimpleOptionDefinition
-
- Site - Class in net.talvi.puffinplot.data
-
A site is a grouping of samples within a suite.
- Site(String, List<Sample>) - Constructor for class net.talvi.puffinplot.data.Site
-
Creates a site containing the specified samples.
- Site(String) - Constructor for class net.talvi.puffinplot.data.Site
-
Creates a site containing no samples.
- SiteEqualAreaPlot - Class in net.talvi.puffinplot.plots
-
An equal-area plot showing data for a site.
- SiteEqualAreaPlot(PlotParams, Rectangle2D) - Constructor for class net.talvi.puffinplot.plots.SiteEqualAreaPlot
-
Creates a site equal area plot with the supplied parameters.
- SiteEqualAreaPlot(PlotParams) - Constructor for class net.talvi.puffinplot.plots.SiteEqualAreaPlot
-
Creates a site equal area plot with the supplied parameters.
- SiteMeanDisplay - Class in net.talvi.puffinplot.window
-
A graph display containing a single equal-area plot which shows
data for a site.
- SiteMeanDisplay(PlotParams) - Constructor for class net.talvi.puffinplot.window.SiteMeanDisplay
-
Creates a new site mean graph display.
- SiteMeanWindow - Class in net.talvi.puffinplot.window
-
A window containing a site mean graph display.
- SiteMeanWindow(PlotParams) - Constructor for class net.talvi.puffinplot.window.SiteMeanWindow
-
Creates a new site mean window.
- siteName(Sample) - Method in interface net.talvi.puffinplot.data.Suite.SiteNamer
-
Determines a site name from a sample name.
- SiteParamsLegend - Class in net.talvi.puffinplot.plots
-
This plot shows site directions in textual form.
- SiteParamsLegend(PlotParams) - Constructor for class net.talvi.puffinplot.plots.SiteParamsLegend
-
Creates a site data table with the supplied parameters.
- SiteParamsTable - Class in net.talvi.puffinplot.plots
-
A table showing site mean directions for the whole suite.
- SiteParamsTable(PlotParams) - Constructor for class net.talvi.puffinplot.plots.SiteParamsTable
-
Creates a site parameter table with the supplied parameters.
- size() - Method in class net.talvi.puffinplot.data.CustomFields
-
Returns the number of values in this list.
- sortSamplesByDepth() - Method in class net.talvi.puffinplot.data.Suite
-
Sorts this suite's samples in ascending order of depth
- SOURCE_URL_STRING - Static variable in class net.talvi.puffinplot.JythonJarManager
-
A string representation of the URL from which the jython jar is
downloaded.
- specifiesDirection() - Method in class net.talvi.puffinplot.data.file.FileFormat
-
Determines whether this format specifies a three-dimensional direction.
- specifiesFullVector() - Method in class net.talvi.puffinplot.data.file.FileFormat
-
Determines whether this format specifies a full magnetization vector.
- spherInterpDir(Vec3, Vec3, Vec3, double) - Static method in class net.talvi.puffinplot.data.Vec3
-
Interpolates a great-circle path in a chosen direction between two
specified vectors.
- spherInterpolate(Vec3, Vec3, double) - Static method in class net.talvi.puffinplot.data.Vec3
-
Given two vectors, interpolates unit vectors along a great-circle path
between them.
- StepwiseSampleRpiEstimate - Class in net.talvi.puffinplot.data
-
An estimate of relative palaeointensity for a single sample, normalized
by a stepwise series of AF fields.
- Suite - Class in net.talvi.puffinplot.data
-
A suite of data, containing a number of samples.
- Suite(String) - Constructor for class net.talvi.puffinplot.data.Suite
-
Creates a new, empty suite.
- Suite.MissingSampleNameException - Exception in net.talvi.puffinplot.data
-
This exception indicates that a supplied argument did not contain
an expected sample name.
- Suite.SavedListener - Interface in net.talvi.puffinplot.data
-
A listener interface for modifications to the Suite's save state.
- Suite.SiteNamer - Interface in net.talvi.puffinplot.data
-
A SiteNamer turns a sample name into a site name.
- SuiteCalcs - Class in net.talvi.puffinplot.data
-
Represents a set of calculations for a suite of data.
- SuiteCalcs(SuiteCalcs.Means, SuiteCalcs.Means, SuiteCalcs.Means, SuiteCalcs.Means) - Constructor for class net.talvi.puffinplot.data.SuiteCalcs
-
Creates a new SuiteCalcs object.
- SuiteCalcs.Means - Class in net.talvi.puffinplot.data
-
Fisher statistics for the suite.
- SuiteEqAreaDisplay - Class in net.talvi.puffinplot.window
-
A graph display which contains a single equal-area plot of Fisher means
at suite level.
- SuiteEqAreaDisplay(PlotParams) - Constructor for class net.talvi.puffinplot.window.SuiteEqAreaDisplay
-
Creates a new suite equal-area graph display
- SuiteEqAreaWindow - Class in net.talvi.puffinplot.window
-
- SuiteEqAreaWindow(PuffinApp) - Constructor for class net.talvi.puffinplot.window.SuiteEqAreaWindow
-
Creates a new suite equal-area window.
- SuiteEqualAreaPlot - Class in net.talvi.puffinplot.plots
-
An equal-area plot data for an entire suite.
- SuiteEqualAreaPlot(PlotParams) - Constructor for class net.talvi.puffinplot.plots.SuiteEqualAreaPlot
-
Creates a suite equal area plot with the supplied parameters.
- suiteMeans - Variable in class net.talvi.puffinplot.PuffinActions
-
Calculates Fisher statistics on sample PCA directions for all
selected samples, and on site means for all selected sites.
- SuiteParamsTable - Class in net.talvi.puffinplot.plots
-
A table which displays site location and VGP data.
- SuiteParamsTable(PlotParams) - Constructor for class net.talvi.puffinplot.plots.SuiteParamsTable
-
Creates a suite parameter table with the supplied parameters.
- SuiteRpiEstimate<EstimateType extends SampleRpiEstimate> - Class in net.talvi.puffinplot.data
-
A collection of RPI estimates.
- suitesChanged() - Method in class net.talvi.puffinplot.window.MainWindow
-
Informs this window that the list of currently loaded data suites has
changed.
- sum(Collection<Vec3>) - Static method in class net.talvi.puffinplot.data.Vec3
-
Returns the sum of a specified collection of vectors.
- swapAdjacent(int) - Method in class net.talvi.puffinplot.data.CustomFields
-
Swaps the values in two adjacent positions within this custom field list.