Uses of Class
net.talvi.puffinplot.data.Sample

Packages that use Sample

Package	Description
net.talvi.puffinplot	net.talvi.puffinplot is a library and GUI application for plotting and analysing palaeomagnetic data.
net.talvi.puffinplot.data	This package contains code to read, store, analyse, and write palaeomagnetic data.
net.talvi.puffinplot.plots	This package contains classes for plotting palaeomagnetic data.
net.talvi.puffinplot.window	This package contains windows and related GUI classes for PuffinPlot.

Uses of Sample in net.talvi.puffinplot

Methods in net.talvi.puffinplot that return Sample

Modifier and Type	Method and Description
Sample	PuffinApp.getCurrentSample() Gets the currently displayed Sample

Methods in net.talvi.puffinplot that return types with arguments of type Sample

Modifier and Type	Method and Description
java.util.List<Sample>	PuffinApp.getAllSamplesInSelectedSites() Gets all the samples in all the sites having at least one selected sample.
java.util.List<Sample>	PuffinApp.getSelectedSamples() Gets all the currently selected samples.

Method parameters in net.talvi.puffinplot with type arguments of type Sample

Modifier and Type	Method and Description
static java.util.Optional<java.lang.Exception>	Bundle.createBundle(Suite suite, java.nio.file.Path bundlePath, Correction correction, java.util.List<Sample> samples, java.util.List<Site> sites, boolean copyJarFile) Create and save a PuffinPlot data bundle.
void	PuffinApp.modifySelectedSamples(java.util.function.Consumer<Sample> function) Applies the supplied function to each of the currently selected samples, then redoes any existing calculations for the selected samples and any sites that contain them.
void	PuffinApp.recalculateSamplesAndSites(java.util.Collection<Sample> samples) Redo existing sample and site calculations affected by specified samples.

Uses of Sample in net.talvi.puffinplot.data

Methods in net.talvi.puffinplot.data that return Sample

Modifier and Type	Method and Description
Sample	Suite.getCurrentSample() Returns the current sample
Sample	MagSusSampleRpiEstimate.getNormalizer()
Sample	StepwiseSampleRpiEstimate.getNormalizer()
Sample	MagSusSampleRpiEstimate.getNrmSample()
Sample	SampleRpiEstimate.getNrmSample()
Sample	StepwiseSampleRpiEstimate.getNrmSample()
Sample	TreatmentStep.getSample() Returns the sample of which this measurement was made.
Sample	Suite.getSampleByIndex(int i) Returns the sample with the specified index.
Sample	Suite.getSampleByName(java.lang.String name) Returns a sample from this suite with the specified name, or null if no such sample exists.

Methods in net.talvi.puffinplot.data that return types with arguments of type Sample

Modifier and Type	Method and Description
java.util.Set<Sample>	CoreSections.getEndSamples(int margin) Returns a set containing all the samples which are near the end of any section within this group of sections.
java.util.List<Sample>	CoreSection.getSamples()
java.util.List<Sample>	SampleGroup.getSamples()
java.util.List<Sample>	Site.getSamples() Returns the samples in this site
java.util.List<Sample>	Suite.getSamples() Returns all the samples in this suite.
java.util.List<Sample>	Suite.getSamplesByDiscreteId(java.lang.String id) Return the samples with a given discrete ID.
java.util.List<Sample>	CoreSection.getSamplesNearEnd(CoreSection.End end, int nSamples) Returns the topmost or bottommost samples in this core section.

Methods in net.talvi.puffinplot.data with parameters of type Sample

Modifier and Type	Method and Description
static PcaAnnotated	PcaAnnotated.calculate(Sample sample, Correction correction) Performs principal component analysis (PCA) on the specified sample.
int	Suite.getIndexBySample(Sample sample) Returns the index of a specified sample within this suite.
void	TreatmentStep.setSample(Sample newSample) Sets the sample on which this measurement was made.
java.lang.String	Suite.SiteNamer.siteName(Sample sample) Determines a site name from a sample name.

Method parameters in net.talvi.puffinplot.data with type arguments of type Sample

Modifier and Type	Method and Description
void	Suite.calculateAmsStatistics(java.util.List<Sample> samples, AmsCalculationType calcType, java.lang.String scriptPath) Calculates and stores AMS statistics using an external script.
void	Suite.calculateSuiteMeans(java.util.List<Sample> selSamples, java.util.List<Site> selSites) Calculates Fisher statistics on all the calculated PCA directions for samples within the suite.
void	Suite.clearSites(java.util.Collection<Sample> samples) Clears sites for specified samples within this suite.
static CoreSections	CoreSections.fromSampleListByDiscreteId(java.util.List<Sample> sampleList) Split a sample list into core sections according to the discrete IDs of the samples.
static CoreSection	CoreSection.fromSamples(java.util.List<Sample> samples) Returns a core section containing the specified samples in the specified order.
void	Suite.mergeDuplicateSamples(java.util.Collection<Sample> samples) Within the supplied collection of samples, any two or more samples which have the same depth or discrete ID will be merged into a single sample.
void	Suite.mergeDuplicateTreatmentSteps(java.util.Collection<Sample> samplesToMerge) Within each of the supplied samples, merges any TreatmentStep objects which have the same treatment type and treatment level.
static void	Sample.mergeSamples(java.util.List<Sample> samples) Merges the demagnetization data of the supplied samples into the first sample in the list.
void	Suite.removeSamples(java.util.Collection<Sample> samplesToRemove) Removes the specified samples from this suite.
void	Suite.removeSamplesByTreatmentType(java.util.Collection<Sample> removableSamples, TreatmentType treatmentType) For every sample in the supplied collection: remove the sample from this suite if any of its treatment steps has the specified treatment type.
void	Suite.setNamedSiteForSamples(java.util.Collection<Sample> samples, java.lang.String siteName) Explicitly sets a site for the specified samples.
void	Suite.setSiteNamesByDepth(java.util.Collection<Sample> samples, double thickness) Sets site names for a continuous suite according to the depth of the samples.
void	Suite.setSiteNamesBySubstring(java.util.Collection<Sample> samples, java.util.BitSet charMask) Sets site names for samples according to chosen characters from the sample names.
void	Suite.setSitesForSamples(java.util.Collection<Sample> samples, Suite.SiteNamer siteNamer) Sets sites for supplied samples according to a supplied site namer.

Constructor parameters in net.talvi.puffinplot.data with type arguments of type Sample

Constructor and Description
Site(java.lang.String name, java.util.List<Sample> samples) Creates a site containing the specified samples.

Uses of Sample in net.talvi.puffinplot.plots

Methods in net.talvi.puffinplot.plots that return Sample

Modifier and Type	Method and Description
Sample	PlotParams.getSample() Returns the sample to plot.
Sample	PlotPoint.getSample()

Methods in net.talvi.puffinplot.plots that return types with arguments of type Sample

Modifier and Type	Method and Description
java.util.List<Sample>	PlotParams.getAllSamplesInSelectedSites()
java.util.List<Sample>	PlotParams.getSelectedSamples()

Methods in net.talvi.puffinplot.plots with parameters of type Sample

Modifier and Type	Method and Description
void	SampleClickListener.sampleClicked(Sample sample) Invoked when a sample is clicked in a plot.

Uses of Sample in net.talvi.puffinplot.window

Methods in net.talvi.puffinplot.window that return Sample

Modifier and Type	Method and Description
Sample	MainGraphDisplay.getCurrentlyPrintingSample() If printing is in progress, return the sample which is currently being printed.

Methods in net.talvi.puffinplot.window that return types with arguments of type Sample

Modifier and Type	Method and Description
java.util.List<Sample>	SampleChooser.getSelectedSamples() Returns all the currently selected samples.